This is pdfTeX, Version 3.1415926-1.40.11 (MiKTeX 2.9) (preloaded format=latex 2014.3.4) 4 MAR 2014 14:49 entering extended mode **MAIN.tex (C:\Users\ThomasJagger\Dropbox\Book\MAIN.tex LaTeX2e <2009/09/24> Babel and hyphenation patterns for english, afrikaans, ancientgreek, ar abic, armenian, assamese, basque, bengali, bokmal, bulgarian, catalan, coptic, croatian, czech, danish, dutch, esperanto, estonian, farsi, finnish, french, ga lician, german, german-x-2009-06-19, greek, gujarati, hindi, hungarian, iceland ic, indonesian, interlingua, irish, italian, kannada, kurmanji, lao, latin, lat vian, lithuanian, malayalam, marathi, mongolian, mongolianlmc, monogreek, ngerm an, ngerman-x-2009-06-19, nynorsk, oriya, panjabi, pinyin, polish, portuguese, romanian, russian, sanskrit, serbian, slovak, slovenian, spanish, swedish, swis sgerman, tamil, telugu, turkish, turkmen, ukenglish, ukrainian, uppersorbian, u senglishmax, welsh, loaded. ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\base\book.cls" Document Class: book 2007/10/19 v1.4h Standard LaTeX document class ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\base\bk10.clo" File: bk10.clo 2007/10/19 v1.4h Standard LaTeX file (size option) ) \c@part=\count79 \c@chapter=\count80 \c@section=\count81 \c@subsection=\count82 \c@subsubsection=\count83 \c@paragraph=\count84 \c@subparagraph=\count85 \c@figure=\count86 \c@table=\count87 \abovecaptionskip=\skip41 \belowcaptionskip=\skip42 \bibindent=\dimen102 ) ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\tools\longtable.sty" Package: longtable 2004/02/01 v4.11 Multi-page Table package (DPC) \LTleft=\skip43 \LTright=\skip44 \LTpre=\skip45 \LTpost=\skip46 \LTchunksize=\count88 \LTcapwidth=\dimen103 \LT@head=\box26 \LT@firsthead=\box27 \LT@foot=\box28 \LT@lastfoot=\box29 \LT@cols=\count89 \LT@rows=\count90 \c@LT@tables=\count91 \c@LT@chunks=\count92 \LT@p@ftn=\toks14 ) ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\amsfonts\amsfonts.sty" Package: amsfonts 2009/06/22 v3.00 Basic AMSFonts support \@emptytoks=\toks15 \symAMSa=\mathgroup4 \symAMSb=\mathgroup5 LaTeX Font Info: Overwriting math alphabet `\mathfrak' in version `bold' (Font) U/euf/m/n --> U/euf/b/n on input line 96. ) (C:\Users\ThomasJagger\Dropbox\Book\Sweave.sty Package: Sweave ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\base\ifthen.sty" Package: ifthen 2001/05/26 v1.1c Standard LaTeX ifthen package (DPC) ) ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\graphics\graphicx.sty" Package: graphicx 1999/02/16 v1.0f Enhanced LaTeX Graphics (DPC,SPQR) ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\graphics\keyval.sty" Package: keyval 1999/03/16 v1.13 key=value parser (DPC) \KV@toks@=\toks16 ) ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\graphics\graphics.sty" Package: graphics 2009/02/05 v1.0o Standard LaTeX Graphics (DPC,SPQR) ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\graphics\trig.sty" Package: trig 1999/03/16 v1.09 sin cos tan (DPC) ) ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\00miktex\graphics.cfg" File: graphics.cfg 2007/01/18 v1.5 graphics configuration of teTeX/TeXLive ) Package graphics Info: Driver file: pdftex.def on input line 91. ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\pdftex-def\pdftex.def" File: pdftex.def 2010/11/26 v0.05c Graphics/color for pdfTeX ! Package pdftex.def Error: PDF mode expected, but DVI mode detected! (pdftex.def) If you are using `latex', then call `pdflatex'. (pdftex.def) Otherwise check and correct the driver options. (pdftex.def) Error recovery by switching to PDF mode. See the pdftex.def package documentation for explanation. Type H for immediate help. ... l.456 }\@ehc ? q OK, entering \batchmode... \Gread@gobject=\count93 )) \Gin@req@height=\dimen104 \Gin@req@width=\dimen105 ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\latex\fancyvrb\fancyvrb.s ty Package: fancyvrb 2008/02/07 Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix <2008/02/07> (tvz) \FV@CodeLineNo=\count94 \FV@InFile=\read1 \FV@TabBox=\box30 \c@FancyVerbLine=\count95 \FV@StepNumber=\count96 \FV@OutFile=\write3 ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\latex\upquote\upquote.sty Package: upquote 2003/08/11 v1.1 Covington's upright-quote modification to verb atim and verb ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\base\textcomp.sty" Package: textcomp 2005/09/27 v1.99g Standard LaTeX package Package textcomp Info: Sub-encoding information: (textcomp) 5 = only ISO-Adobe without \textcurrency (textcomp) 4 = 5 + \texteuro (textcomp) 3 = 4 + \textohm (textcomp) 2 = 3 + \textestimated + \textcurrency (textcomp) 1 = TS1 - \textcircled - \t (textcomp) 0 = TS1 (full) (textcomp) Font families with sub-encoding setting implement (textcomp) only a restricted character set as indicated. (textcomp) Family '?' is the default used for unknown fonts. (textcomp) See the documentation for details. Package textcomp Info: Setting ? sub-encoding to TS1/1 on input line 71. ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\base\ts1enc.def" File: ts1enc.def 2001/06/05 v3.0e (jk/car/fm) Standard LaTeX file ) LaTeX Info: Redefining \oldstylenums on input line 266. Package textcomp Info: Setting cmr sub-encoding to TS1/0 on input line 281. Package textcomp Info: Setting cmss sub-encoding to TS1/0 on input line 282. Package textcomp Info: Setting cmtt sub-encoding to TS1/0 on input line 283. Package textcomp Info: Setting cmvtt sub-encoding to TS1/0 on input line 284. Package textcomp Info: Setting cmbr sub-encoding to TS1/0 on input line 285. Package textcomp Info: Setting cmtl sub-encoding to TS1/0 on input line 286. Package textcomp Info: Setting ccr sub-encoding to TS1/0 on input line 287. Package textcomp Info: Setting ptm sub-encoding to TS1/4 on input line 288. Package textcomp Info: Setting pcr sub-encoding to TS1/4 on input line 289. Package textcomp Info: Setting phv sub-encoding to TS1/4 on input line 290. Package textcomp Info: Setting ppl sub-encoding to TS1/3 on input line 291. Package textcomp Info: Setting pag sub-encoding to TS1/4 on input line 292. Package textcomp Info: Setting pbk sub-encoding to TS1/4 on input line 293. Package textcomp Info: Setting pnc sub-encoding to TS1/4 on input line 294. Package textcomp Info: Setting pzc sub-encoding to TS1/4 on input line 295. Package textcomp Info: Setting bch sub-encoding to TS1/4 on input line 296. Package textcomp Info: Setting put sub-encoding to TS1/5 on input line 297. Package textcomp Info: Setting uag sub-encoding to TS1/5 on input line 298. Package textcomp Info: Setting ugq sub-encoding to TS1/5 on input line 299. Package textcomp Info: Setting ul8 sub-encoding to TS1/4 on input line 300. Package textcomp Info: Setting ul9 sub-encoding to TS1/4 on input line 301. Package textcomp Info: Setting augie sub-encoding to TS1/5 on input line 302. Package textcomp Info: Setting dayrom sub-encoding to TS1/3 on input line 303. Package textcomp Info: Setting dayroms sub-encoding to TS1/3 on input line 304. Package textcomp Info: Setting pxr sub-encoding to TS1/0 on input line 305. Package textcomp Info: Setting pxss sub-encoding to TS1/0 on input line 306. Package textcomp Info: Setting pxtt sub-encoding to TS1/0 on input line 307. Package textcomp Info: Setting txr sub-encoding to TS1/0 on input line 308. Package textcomp Info: Setting txss sub-encoding to TS1/0 on input line 309. Package textcomp Info: Setting txtt sub-encoding to TS1/0 on input line 310. Package textcomp Info: Setting futs sub-encoding to TS1/4 on input line 311. Package textcomp Info: Setting futx sub-encoding to TS1/4 on input line 312. Package textcomp Info: Setting futj sub-encoding to TS1/4 on input line 313. Package textcomp Info: Setting hlh sub-encoding to TS1/3 on input line 314. Package textcomp Info: Setting hls sub-encoding to TS1/3 on input line 315. Package textcomp Info: Setting hlst sub-encoding to TS1/3 on input line 316. Package textcomp Info: Setting hlct sub-encoding to TS1/5 on input line 317. Package textcomp Info: Setting hlx sub-encoding to TS1/5 on input line 318. Package textcomp Info: Setting hlce sub-encoding to TS1/5 on input line 319. Package textcomp Info: Setting hlcn sub-encoding to TS1/5 on input line 320. Package textcomp Info: Setting hlcw sub-encoding to TS1/5 on input line 321. Package textcomp Info: Setting hlcf sub-encoding to TS1/5 on input line 322. Package textcomp Info: Setting pplx sub-encoding to TS1/3 on input line 323. Package textcomp Info: Setting pplj sub-encoding to TS1/3 on input line 324. Package textcomp Info: Setting ptmx sub-encoding to TS1/4 on input line 325. Package textcomp Info: Setting ptmj sub-encoding to TS1/4 on input line 326. ))) (C:\Users\ThomasJagger\Dropbox\Book\natbib.sty Package: natbib 1998/07/14 6.8c (PWD) \bibhang=\skip47 \bibsep=\skip48 LaTeX Info: Redefining \cite on input line 467. \c@NAT@ctr=\count97 ) ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\psnfss\times.sty" Package: times 2005/04/12 PSNFSS-v9.2a (SPQR) ) ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\base\makeidx.sty" Package: makeidx 2000/03/29 v1.0m Standard LaTeX package ) ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\graphics\epsfig.sty" Package: epsfig 1999/02/16 v1.7a (e)psfig emulation (SPQR) \epsfxsize=\dimen106 \epsfysize=\dimen107 ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\latex\pgf\frontendlayer\t ikz.sty (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\latex\pgf\basiclayer\pgf. sty (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\latex\pgf\utilities\pgfrc s.sty (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\utilities\pgf util-common.tex \pgfutil@everybye=\toks17 ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\utilities\pgf util-latex.def \pgfutil@abb=\box31 (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\latex\ms\everyshi.sty Package: everyshi 2001/05/15 v3.00 EveryShipout Package (MS) )) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\utilities\pgf rcs.code.tex Package: pgfrcs 2010/10/25 v2.10 (rcs-revision 1.24) )) Package: pgf 2008/01/15 v2.10 (rcs-revision 1.12) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\latex\pgf\basiclayer\pgfc ore.sty (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\latex\pgf\systemlayer\pgf sys.sty (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\systemlayer\p gfsys.code.tex Package: pgfsys 2010/06/30 v2.10 (rcs-revision 1.37) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\utilities\pgf keys.code.tex \pgfkeys@pathtoks=\toks18 \pgfkeys@temptoks=\toks19 (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\utilities\pgf keysfiltered.code.tex \pgfkeys@tmptoks=\toks20 )) \pgf@x=\dimen108 \pgf@y=\dimen109 \pgf@xa=\dimen110 \pgf@ya=\dimen111 \pgf@xb=\dimen112 \pgf@yb=\dimen113 \pgf@xc=\dimen114 \pgf@yc=\dimen115 \w@pgf@writea=\write4 \r@pgf@reada=\read2 \c@pgf@counta=\count98 \c@pgf@countb=\count99 \c@pgf@countc=\count100 \c@pgf@countd=\count101 (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\systemlayer\p gf.cfg File: pgf.cfg 2008/05/14 (rcs-revision 1.7) ) Package pgfsys Info: Driver file for pgf: pgfsys-pdftex.def on input line 900. (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\systemlayer\p gfsys-pdftex.def File: pgfsys-pdftex.def 2009/05/22 (rcs-revision 1.26) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\systemlayer\p gfsys-common-pdf.def File: pgfsys-common-pdf.def 2008/05/19 (rcs-revision 1.10) ))) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\systemlayer\p gfsyssoftpath.code.tex File: pgfsyssoftpath.code.tex 2008/07/18 (rcs-revision 1.7) \pgfsyssoftpath@smallbuffer@items=\count102 \pgfsyssoftpath@bigbuffer@items=\count103 ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\systemlayer\p gfsysprotocol.code.tex File: pgfsysprotocol.code.tex 2006/10/16 (rcs-revision 1.4) )) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\latex\xcolor\xcolor.sty Package: xcolor 2007/01/21 v2.11 LaTeX color extensions (UK) ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\00miktex\color.cfg" File: color.cfg 2007/01/18 v1.5 color configuration of teTeX/TeXLive ) Package xcolor Info: Driver file: pdftex.def on input line 225. Package xcolor Info: Model `cmy' substituted by `cmy0' on input line 1337. Package xcolor Info: Model `hsb' substituted by `rgb' on input line 1341. Package xcolor Info: Model `RGB' extended on input line 1353. Package xcolor Info: Model `HTML' substituted by `rgb' on input line 1355. Package xcolor Info: Model `Hsb' substituted by `hsb' on input line 1356. Package xcolor Info: Model `tHsb' substituted by `hsb' on input line 1357. Package xcolor Info: Model `HSB' substituted by `hsb' on input line 1358. Package xcolor Info: Model `Gray' substituted by `gray' on input line 1359. Package xcolor Info: Model `wave' substituted by `hsb' on input line 1360. ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\graphics\dvipsnam.def" File: dvipsnam.def 1999/02/16 v3.0i Driver-dependant file (DPC,SPQR) )) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\basiclayer\pg fcore.code.tex Package: pgfcore 2010/04/11 v2.10 (rcs-revision 1.7) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\math\pgfmath. code.tex (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\math\pgfmathc alc.code.tex (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\math\pgfmathu til.code.tex) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\math\pgfmathp arser.code.tex \pgfmath@dimen=\dimen116 \pgfmath@count=\count104 \pgfmath@box=\box32 \pgfmath@toks=\toks21 \pgfmath@stack@operand=\toks22 \pgfmath@stack@operation=\toks23 ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\math\pgfmathf unctions.code.tex (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\math\pgfmathf unctions.basic.code.tex) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\math\pgfmathf unctions.trigonometric.code.tex) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\math\pgfmathf unctions.random.code.tex) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\math\pgfmathf unctions.comparison.code.tex) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\math\pgfmathf unctions.base.code.tex) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\math\pgfmathf unctions.round.code.tex) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\math\pgfmathf unctions.misc.code.tex))) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\math\pgfmathf loat.code.tex \c@pgfmathroundto@lastzeros=\count105 )) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\basiclayer\pg fcorepoints.code.tex File: pgfcorepoints.code.tex 2010/04/09 (rcs-revision 1.20) \pgf@picminx=\dimen117 \pgf@picmaxx=\dimen118 \pgf@picminy=\dimen119 \pgf@picmaxy=\dimen120 \pgf@pathminx=\dimen121 \pgf@pathmaxx=\dimen122 \pgf@pathminy=\dimen123 \pgf@pathmaxy=\dimen124 \pgf@xx=\dimen125 \pgf@xy=\dimen126 \pgf@yx=\dimen127 \pgf@yy=\dimen128 \pgf@zx=\dimen129 \pgf@zy=\dimen130 ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\basiclayer\pg fcorepathconstruct.code.tex File: pgfcorepathconstruct.code.tex 2010/08/03 (rcs-revision 1.24) \pgf@path@lastx=\dimen131 \pgf@path@lasty=\dimen132 ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\basiclayer\pg fcorepathusage.code.tex File: pgfcorepathusage.code.tex 2008/04/22 (rcs-revision 1.12) \pgf@shorten@end@additional=\dimen133 \pgf@shorten@start@additional=\dimen134 ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\basiclayer\pg fcorescopes.code.tex File: pgfcorescopes.code.tex 2010/09/08 (rcs-revision 1.34) \pgfpic=\box33 \pgf@hbox=\box34 \pgf@layerbox@main=\box35 \pgf@picture@serial@count=\count106 ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\basiclayer\pg fcoregraphicstate.code.tex File: pgfcoregraphicstate.code.tex 2008/04/22 (rcs-revision 1.9) \pgflinewidth=\dimen135 ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\basiclayer\pg fcoretransformations.code.tex File: pgfcoretransformations.code.tex 2009/06/10 (rcs-revision 1.11) \pgf@pt@x=\dimen136 \pgf@pt@y=\dimen137 \pgf@pt@temp=\dimen138 ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\basiclayer\pg fcorequick.code.tex File: pgfcorequick.code.tex 2008/10/09 (rcs-revision 1.3) ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\basiclayer\pg fcoreobjects.code.tex File: pgfcoreobjects.code.tex 2006/10/11 (rcs-revision 1.2) ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\basiclayer\pg fcorepathprocessing.code.tex File: pgfcorepathprocessing.code.tex 2008/10/09 (rcs-revision 1.8) ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\basiclayer\pg fcorearrows.code.tex File: pgfcorearrows.code.tex 2008/04/23 (rcs-revision 1.11) ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\basiclayer\pg fcoreshade.code.tex File: pgfcoreshade.code.tex 2008/11/23 (rcs-revision 1.13) \pgf@max=\dimen139 \pgf@sys@shading@range@num=\count107 ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\basiclayer\pg fcoreimage.code.tex File: pgfcoreimage.code.tex 2010/03/25 (rcs-revision 1.16) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\basiclayer\pg fcoreexternal.code.tex File: pgfcoreexternal.code.tex 2010/09/01 (rcs-revision 1.17) \pgfexternal@startupbox=\box36 )) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\basiclayer\pg fcorelayers.code.tex File: pgfcorelayers.code.tex 2010/08/27 (rcs-revision 1.2) ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\basiclayer\pg fcoretransparency.code.tex File: pgfcoretransparency.code.tex 2008/01/17 (rcs-revision 1.2) ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\basiclayer\pg fcorepatterns.code.tex File: pgfcorepatterns.code.tex 2009/07/02 (rcs-revision 1.3) ))) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\modules\pgfmo duleshapes.code.tex File: pgfmoduleshapes.code.tex 2010/09/09 (rcs-revision 1.13) \pgfnodeparttextbox=\box37 ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\modules\pgfmo duleplot.code.tex File: pgfmoduleplot.code.tex 2010/10/22 (rcs-revision 1.8) ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\latex\pgf\compatibility\p gfcomp-version-0-65.sty Package: pgfcomp-version-0-65 2007/07/03 v2.10 (rcs-revision 1.7) \pgf@nodesepstart=\dimen140 \pgf@nodesepend=\dimen141 ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\latex\pgf\compatibility\p gfcomp-version-1-18.sty Package: pgfcomp-version-1-18 2007/07/23 v2.10 (rcs-revision 1.1) )) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\latex\pgf\utilities\pgffo r.sty (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\latex\pgf\utilities\pgfke ys.sty (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\utilities\pgf keys.code.tex)) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\utilities\pgf for.code.tex Package: pgffor 2010/03/23 v2.10 (rcs-revision 1.18) \pgffor@iter=\dimen142 \pgffor@skip=\dimen143 \pgffor@stack=\toks24 \pgffor@toks=\toks25 )) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\frontendlayer \tikz\tikz.code.tex Package: tikz 2010/10/13 v2.10 (rcs-revision 1.76) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\libraries\pgf libraryplothandlers.code.tex File: pgflibraryplothandlers.code.tex 2010/05/31 v2.10 (rcs-revision 1.15) \pgf@plot@mark@count=\count108 \pgfplotmarksize=\dimen144 ) \tikz@lastx=\dimen145 \tikz@lasty=\dimen146 \tikz@lastxsaved=\dimen147 \tikz@lastysaved=\dimen148 \tikzleveldistance=\dimen149 \tikzsiblingdistance=\dimen150 \tikz@figbox=\box38 \tikz@tempbox=\box39 \tikztreelevel=\count109 \tikznumberofchildren=\count110 \tikznumberofcurrentchild=\count111 \tikz@fig@count=\count112 (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\modules\pgfmo dulematrix.code.tex File: pgfmodulematrix.code.tex 2010/08/24 (rcs-revision 1.4) \pgfmatrixcurrentrow=\count113 \pgfmatrixcurrentcolumn=\count114 \pgf@matrix@numberofcolumns=\count115 ) \tikz@expandcount=\count116 (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\generic\pgf\frontendlayer \tikz\libraries\tikzlibrarytopaths.code.tex File: tikzlibrarytopaths.code.tex 2008/06/17 v2.10 (rcs-revision 1.2) ))) ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\ltxmisc\url.sty" \Urlmuskip=\muskip10 Package: url 2006/04/12 ver 3.3 Verb mode for urls, etc. ) ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\base\syntonly.sty" Package: syntonly 1999/09/17 v2.1e Standard LaTeX2e package ) LaTeX Warning: Unused global option(s): [usenames]. (C:\Users\ThomasJagger\Dropbox\Book\MAIN.aux No file Preface.aux. (C:\Users\ThomasJagger\Dropbox\Book\Chap01/Chapter01.aux) No file Chap02/Chapter02.aux. (C:\Users\ThomasJagger\Dropbox\Book\Chap03/Chapter03.aux) (C:\Users\ThomasJagger\Dropbox\Book\Chap04/Chapter04.aux) (C:\Users\ThomasJagger\Dropbox\Book\Chap05/Chapter05.aux) (C:\Users\ThomasJagger\Dropbox\Book\Chap06/Chapter06.aux) (C:\Users\ThomasJagger\Dropbox\Book\Chap07/Chapter07.aux)) LaTeX Font Info: Checking defaults for OML/cmm/m/it on input line 71. LaTeX Font Info: ... okay on input line 71. LaTeX Font Info: Checking defaults for T1/cmr/m/n on input line 71. LaTeX Font Info: ... okay on input line 71. LaTeX Font Info: Checking defaults for OT1/cmr/m/n on input line 71. LaTeX Font Info: ... okay on input line 71. LaTeX Font Info: Checking defaults for OMS/cmsy/m/n on input line 71. LaTeX Font Info: ... okay on input line 71. LaTeX Font Info: Checking defaults for OMX/cmex/m/n on input line 71. LaTeX Font Info: ... okay on input line 71. LaTeX Font Info: Checking defaults for U/cmr/m/n on input line 71. LaTeX Font Info: ... okay on input line 71. LaTeX Font Info: Checking defaults for TS1/cmr/m/n on input line 71. LaTeX Font Info: Try loading font information for TS1+cmr on input line 71. ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\base\ts1cmr.fd" File: ts1cmr.fd 1999/05/25 v2.5h Standard LaTeX font definitions ) LaTeX Font Info: ... okay on input line 71. LaTeX Font Info: Try loading font information for OT1+ptm on input line 71. ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\psnfss\ot1ptm.fd" File: ot1ptm.fd 2001/06/04 font definitions for OT1/ptm. ) (C:\Users\ThomasJagger\AppData\Roaming\MiKTeX\2.9\tex\context\base\supp-pdf.mki i [Loading MPS to PDF converter (version 2006.09.02).] \scratchcounter=\count117 \scratchdimen=\dimen151 \scratchbox=\box40 \nofMPsegments=\count118 \nofMParguments=\count119 \everyMPshowfont=\toks26 \MPscratchCnt=\count120 \MPscratchDim=\dimen152 \MPnumerator=\count121 \everyMPtoPDFconversion=\toks27 ) ABD: EveryShipout initializing macros LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <17.28> not available (Font) Font shape `OT1/ptm/b/n' tried instead on input line 86. LaTeX Font Info: Try loading font information for U+msa on input line 86. ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\amsfonts\umsa.fd" File: umsa.fd 2009/06/22 v3.00 AMS symbols A ) LaTeX Font Info: Try loading font information for U+msb on input line 86. ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\amsfonts\umsb.fd" File: umsb.fd 2009/06/22 v3.00 AMS symbols B ) [1 {C:/Users/ThomasJagger/AppData/Local/MiKTeX/2.9/pdftex/config/pdftex.map}] \c@density=\count122 Overfull \hbox (11.83304pt too wide) in paragraph at lines 114--118 [][][] [] Underfull \hbox (badness 10000) in paragraph at lines 114--118 [] [2] LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <24.88> not available (Font) Font shape `OT1/ptm/b/n' tried instead on input line 122. (C:\Users\ThomasJagger\Dropbox\Book\MAIN.toc) \tf@toc=\write5 [3 ] LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <10> not available (Font) Font shape `OT1/ptm/b/n' tried instead on input line 124. [4 ] LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <20.74> not available (Font) Font shape `OT1/ptm/b/n' tried instead on input line 125. [1 ] [174 ] (C:\Users\ThomasJagger\Dropbox\Book\Chap07/Chapter07.tex Chapter 7. Underfull \hbox (badness 10000) in paragraph at lines 11--12 [] LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <14.4> not available (Font) Font shape `OT1/ptm/b/n' tried instead on input line 17. LaTeX Warning: Reference `chap:Rtutorial' on page 175 undefined on input line 1 9. LaTeX Font Info: Try loading font information for OT1+pcr on input line 21. ("C:\Program Files (x86)\MiKTeX 2.9\tex\latex\psnfss\ot1pcr.fd" File: ot1pcr.fd 2001/06/04 font definitions for OT1/pcr. ) [175 ] (C:\Users\ThomasJagger\Dropbox\Book\Chap07/Chap07-seriesandhist.tikz) LaTeX Font Info: Font shape `OT1/ptm/bx/n' in size <12> not available (Font) Font shape `OT1/ptm/b/n' tried instead on input line 76. [176] [177] [178] [179] (C:\Users\ThomasJagger\Dropbox\Book\Chap07/Chap07-observedvssimulatedcounts.tik z